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SRX3260361: Microbe sample for Escherichia coli E4742
1 ION_TORRENT (Ion Torrent PGM) run: 1.3M spots, 283.7M bases, 220.5Mb downloads

Design: dna from E. coli isolate in sediment
Submitted by: The Hong Kong University of Science and Technology
Study: Escherichia sp. Genome sequencing and assembly
show Abstracthide Abstract
Recently, five distinct clades of Escherichia have been recovered from the aquatic environments, and they are believed to be environmentally adapted. We collected more than 4000 strains from the various environment of Hong Kong and isolated 17 environmentally adapted E. coli isolates from marine sediment. We will try to find how these strains have evolved and whether they are ecologically different from E. coli sensus stricto. These findings will expand our understanding of the ecology and the role of genetic traits, recombination, horizontal gene transfer and natural selection on the adaptation of E. coli population to different niches. Genomes sequenced using the Ion Torrent technology.
Sample: Environmental sample from Escherichia sp. E4742
SAMN07759781 • SRS2573685 • All experiments • All runs
Library:
Name: not collected
Instrument: Ion Torrent PGM
Strategy: CLONE
Source: GENOMIC
Selection: cDNA
Layout: SINGLE
Runs: 1 run, 1.3M spots, 283.7M bases, 220.5Mb
Run# of Spots# of BasesSizePublished
SRR61483411,270,039283.7M220.5Mb2018-11-01

ID:
4577599

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